What mboard do you have.
For mine, gigabyte ma78gm-s2h (I think), I don't know exactly how this could be done. The mboard has pins for front audio wires. I suppose these could be routed to your separate videocard. Better yet is probably the spdif_io port but requires an optional cable and the receiver needs to be able to support digital audio.
My bios doesn't have a disable integrated video option. I can only choose between D-sub/DVI or D-sub/hdmi. D-sub is the std rgb. I don't know that you can force output solely to your discrete video card. You're probably not too concerned about that anyway and it sounds like your on-board options are d-sub/dvi.
My bios does have an option for init first display and I can choose pci, onboard, or PEG (pci-express graphics).
For onboard audio I can only choose enable or disable. Can't direct to any specific ports or formats. That should be done by software/kernel anyway.
So, if it will work, you will have to probably route wires from spdif to new graphics card and then figure how to enable. What does aplay -l and aplay -L show?
Based on what they show you may need to unmute in alsamixer (try alsamxier -c0 and alsamixer -c1. Do both work?).


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