Well, I think it is time for existing security measures to be reassessed. This is beyond ridiculous, its now dangerous. I mean I use phpmyadmin, how can I tell if my own server is safe? I'm gonna have to sit down and study this to figure out how best secure my own data.
What's going on in the world? Even now there is not such "hacker ethic" that protects and helps improving open-source/free software projects (and its security).
I expect to see a lot more of this in the coming years unless many open source projects start taking security a little more serious. There are just so many projects out there where security is an afterthought and unless a project recruits someone to be the "security hound dog" in their project it will only get worse.
It would seem that the world of open-source has now become a target. The fact that now THREE KNOWN sites have been compromised within a VERY short time suggests that this is an organized attack against open-source. That means that the source of the attack is probably one of the major CLOSED SOURCE vendors, especially one that feels particularly threatened by open-source -- most likely applesoft, which are under clear and direct threat, and being thoroughly beat. Apple is taking a huge hit against its iTrash by Google, and MS is losing market share to more portable devices like phones and tablets (i.e., an average home user may buy a tablet instead of a desktop/laptop now, and a tablet will have apple or google on it instead of ms).