Try making these same tests, on a desktop environment other than Unity, to compare newer versions of drivers with the older.
In my case, when I switched from Unity 3D to XFCE, I got a significant performance improvement when running Skyrim, through Wine.
I can say that the game that was unplayble on Unity, become playable on XFCE, something comparable to the Windows performance.
My system is:
AMD Phenon X4 2.4GHz, 4GB DDR2 800MHz and Nvidia GeForce 8600 GT (Driver 280.13).


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When adding optimizations, I was mainly testing R500 with PCIe, where most of the user base is. Not sure if anybody else was trying to optimize for AGP...